Effective results for Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 (refseq)

Summary

Number of putative secreted proteins: 116
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 37 eukaryotic-like domains, contained in 116 proteins (2 high, 114 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
WP_028930471.1(PF02882) (PF00763)(mitochondrial); (plastid)
WP_051232544.1(PF00722)mitochondrial; (ER)
WP_028929863.1(PF01315)(mitochondrial)
WP_037056956.1(PF09130)(mitochondrial)
WP_051232867.1(PF00722)ER
WP_028931369.1(PF00274)mitochondrial; ER
WP_028932095.1(PF01717)(mitochondrial)
WP_028931999.1(PF11070)ER
WP_037056752.1(PF00438) (PF02773) (PF02772)
WP_028931622.1(PF00438) (PF02773) (PF02772)
WP_051233064.1(PF00722)(ER)
WP_028931778.1(PF00438) (PF02773) (PF02772)
WP_051233332.1(PF00274)mitochondrial
WP_051232681.1(PF00070)(ER)
WP_037055250.1PF06609mitochondrial; (mitochondrial)
WP_028931689.1(PF12483)ER
WP_028928879.1(PF02577)mitochondrial
WP_051233199.1(PF00722)ER
WP_028930076.1(PF10517)ER
WP_051233353.1(PF00722)ER
WP_037055784.1(PF01927)(mitochondrial)
WP_051233386.1(PF10609)(mitochondrial)
WP_051233461.1(PF02882) (PF00763)
WP_028928805.1(PF02728) (PF01179)
WP_028931704.1(PF03453)(mitochondrial)
WP_051233408.1(PF01969)(ER)
WP_028929251.1(PF02882) (PF00763)
WP_028928833.1(PF03450)(ER)
WP_028929631.1(PF03453)(ER)
WP_028930454.1(PF02728) (PF01179)
WP_028929445.1PF03723 PF00372
WP_028931821.1(PF02882) (PF00763)
WP_037057575.1(PF01315)
WP_051233491.1(PF13359)
WP_028929230.1(PF02219)
WP_028929597.1(PF03450)
WP_028930743.1(PF01315)
WP_028931320.1(PF09130)
WP_028931340.1(PF02577)
WP_051233108.1(PF01315)
WP_028931761.1(PF00274)
WP_051232296.1(PF10609)
WP_051233383.1(PF13847)
WP_051233202.1(PF13847)
WP_051233198.1(PF00722)
WP_028930752.1(PF06032)
WP_028929345.1(PF02577)
WP_028929704.1(PF13359)
WP_051233153.1(PF01315)
WP_051233155.1(PF03450)
WP_051232824.1(PF07991)
WP_037055484.1(PF01717)
WP_051233463.1(PF03453)
WP_028931764.1(PF01717)
WP_028931742.1(PF01927)
WP_051232728.1(PF03069)
WP_051233352.1(PF00722)
WP_028929765.1(PF03450)
WP_051232181.1(PF03450)
WP_051232185.1(PF13359)
WP_028930487.1(PF01315)
WP_028931480.1(PF01680)not used
WP_051233124.1(PF00722)
WP_028931879.1(PF00731)
WP_028930332.1(PF13847)
WP_028931101.1(PF16952)
WP_028929598.1(PF01315)
WP_051233393.1(PF03453)
WP_051233391.1(PF02219)
WP_037057078.1(PF13847)
WP_028930403.1(PF00731)
WP_051233305.1(PF13359)
WP_028930168.1(PF01680)
WP_028930744.1(PF03450)
WP_028928835.1(PF01315)
WP_051233524.1(PF10517)
WP_051232862.1(PF03450)
WP_051232860.1(PF01315)
WP_028931681.1(PF00731)
WP_028928731.1(PF01717)
WP_028929612.1(PF03450)
WP_028929614.1(PF01315)
WP_037058202.1(PF13847)
WP_028929781.1(PF01786)
WP_051233451.1(PF13847)
WP_051233441.1(PF02219)
WP_028930379.1(PF13847)
WP_028928838.1(PF06032)
WP_051233341.1(PF08326)
WP_028928904.1(PF03069)
WP_051233448.1(PF07991)
WP_028931703.1(PF03453)
WP_028929327.1(PF16321)
WP_051232658.1(PF01315)
WP_051232486.1(PF13847)
WP_028931431.1(PF03069)
WP_028931880.1(PF01969)
WP_028930978.1(PF01680)
WP_028929521.1(PF16321)
WP_028932018.1(PF13847)
WP_028930630.1(PF13847)
WP_051233033.1(PF02577)
WP_037055308.1(PF01315)
WP_051232934.1(PF16321)
WP_051233142.1(PF13359)
WP_037057695.1(PF01717)
WP_028931056.1(PF03453)
WP_028931777.1(PF01717)
WP_037055594.1(PF01315)
WP_028931004.1(PF03450)
WP_028930746.1(PF06032)
WP_028929321.1(PF13847)
WP_028930726.1(PF10609)
WP_028928803.1(PF03069)
WP_037056102.1(PF02219)
WP_028931214.1(PF07991)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================