Effective results for marine gamma proteobacterium HTCC2148 (refseq)

Summary

Number of putative secreted proteins: 103
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 103 proteins (2 high, 101 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
WP_007228058.1				(PF06742) (PF06863)	mitochondrial
WP_007227811.1				(PF06742) (PF06863)	ER
WP_007227819.1				(PF06742) (PF06863)	ER
WP_007228900.1				(PF06742) (PF06863)	ER
WP_040541770.1				(PF06742) (PF06863)	ER
WP_007227767.1				(PF01571) (PF08669)	ER; (ER)
WP_040541225.1				(PF12740)	ER
WP_040541618.1				(PF14863)	ER
WP_007227954.1				(PF06742)	ER
WP_007230896.1				(PF13469)	mitochondrial
WP_007229366.1				(PF15071)	ER
WP_007227114.1				PF08549	ER
WP_007229103.1				(PF14216)	(ER)
WP_007228926.1				(PF00848)	(mitochondrial); (plastid)
WP_040541271.1				(PF11815)	(mitochondrial)
WP_040541602.1				(PF14863)	ER
WP_007228021.1				(PF13768)	ER
WP_040540148.1				(PF12740)	ER
WP_050756505.1				(PF11074)	(mitochondrial)
WP_007230312.1				(PF14863)	ER
WP_007228892.1				(PF06742)	ER
WP_007230195.1				(PF03055)	ER
WP_007227289.1				(PF06863)	ER
WP_007229920.1				(PF03567)	mitochondrial; (mitochondrial)
WP_040540494.1				(PF13768)	(ER)
WP_007228652.1				(PF01571) (PF08669)
WP_007228612.1				(PF01571) (PF08669)
WP_007227745.1				(PF01571) (PF08669)
WP_007227148.1				(PF01571) (PF08669)
WP_007228461.1				(PF01571) (PF08669)
WP_007228767.1				(PF01571) (PF08669)
WP_007230184.1				(PF01571) (PF08669)
WP_007227944.1				(PF01571) (PF08669)
WP_040540202.1				(PF01571) (PF08669)
WP_007229645.1				(PF01571) (PF08669)
WP_007228690.1				(PF12038)	(mitochondrial)
WP_007228031.1				(PF06742) (PF06863)
WP_040541143.1				(PF16884)	(mitochondrial)
WP_007227385.1				(PF01571) (PF08669)
WP_007228049.1				(PF01571) (PF08669)
WP_007227144.1				(PF07700)
WP_007227917.1				(PF00368)
WP_007227193.1				(PF00848)
WP_007228526.1				(PF00848)
WP_007227379.1				(PF03055)
WP_007229529.1				(PF03055)
WP_040541077.1				(PF00848)
WP_007228501.1				(PF13469)
WP_040539710.1				(PF00848)
WP_040541591.1				(PF13469)
WP_007228890.1				(PF10504)
WP_007228691.1				(PF02958)
WP_007227843.1				(PF00848)
WP_007227297.1				(PF03055)
WP_007230055.1				(PF13469)
WP_007230432.1				(PF12576)
WP_007230134.1				(PF13469)
WP_007230061.1				(PF06742)
WP_007227757.1				(PF06742)
WP_007230236.1				(PF09752)
WP_007227413.1				(PF00848)
WP_040540454.1				(PF03567)
WP_007230843.1				(PF07700)
WP_007228108.1				(PF03567)
WP_040540844.1				(PF01571)
WP_007228483.1				(PF14863)
WP_007227274.1				(PF16884)
WP_007227254.1				(PF00848)
WP_007228005.1				(PF16884)
WP_007229632.1				(PF06742)
WP_007230652.1				(PF02958)
WP_007228521.1				(PF00848)
WP_007227562.1				(PF00848)
WP_007227692.1				(PF03982)
WP_007230744.1				(PF13469)
WP_007228932.1				(PF16884)
WP_050756532.1				(PF13469)
WP_050756471.1				(PF11815)
WP_007227228.1				(PF00848)
WP_007227580.1				(PF16884)
WP_007228446.1				(PF00848)
WP_007227805.1				(PF13469)
WP_007228782.1				(PF16884)
WP_007229706.1				(PF00848)
WP_007227194.1				(PF16884)
WP_050756496.1				(PF02026)
WP_007227180.1				(PF00848)
WP_007229061.1				(PF13768)
WP_007227634.1				(PF03055)
WP_007228514.1				(PF14336)
WP_050756564.1				(PF13661)
WP_007230425.1				(PF13469)
WP_007228247.1				(PF03055)
WP_007230815.1				(PF00848)
WP_007230485.1				(PF13661)
WP_007229785.1				(PF03567)
WP_007229460.1				(PF13469)
WP_007227769.1				(PF13469)
WP_040540772.1				(PF13469)
WP_007228844.1				(PF00848)
WP_007230228.1				(PF00368)
WP_050756502.1				PF06405
WP_040541027.1				(PF16884)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================