Metamenu

Genomes encoding eukaryotic-like proteins

PF00562 RNA polymerase Rpb2, domain 6

Copy number in non-pathogens:
Mean=0.98 Stddev=0.17

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia africana NBRC 100379 s 5 2
Nocardia anaemiae NBRC 100462 s 5 2
Nocardia elegans NBRC 108235 s 5 2
Nocardia mexicana NBRC 108244 s 5 2
Streptomyces turgidiscabies s 5 2
Nocardia crassostreae s 5 2
Nocardia mikamii NBRC 108933 s 5 2
Nocardia araoensis NBRC 100135 s 5 2
Nocardia pneumoniae NBRC 100136 s 5 2
Nocardia tenerifensis NBRC 101015 s 5 2
Nocardia otitidiscaviarum NBRC 14405 s 5 2
Nocardia transvalensis NBRC 15921 s 5 2
Nocardia farcinica IFM 10152 s 5 2
Neisseria gonorrhoeae s 5 2
Neisseria gonorrhoeae s 5 2
Shigella sonnei s 5 2
Streptococcus pneumoniae s 5 2
Ruminococcus sp. JC304 s 5 2
Klebsiella pneumoniae s 5 2
Klebsiella pneumoniae s 5 2
Klebsiella pneumoniae s 5 2
Staphylococcus aureus subsp. aureus s 5 2
Acinetobacter baumannii s 5 2
Bifidobacterium longum s 5 2
Streptococcus pneumoniae s 5 2
[Clostridium asparagiforme] DSM 15981 s 5 2
Pseudoflavonifractor capillosus ATCC 29799 s 5 2
Bacillus cereus Rock4-2 s 5 2
Leptospira weilii serovar Topaz str. LT2116 s 5 2
Salmonella enterica subsp. enterica serovar Typhimurium str. STm7 s 5 2
Acinetobacter sp. 216872 s 5 2
Streptomyces turgidiscabies Car8 s 5 2
Actinomadura flavalba DSM 45200 s 5 2
Acinetobacter baumannii ABNIH7 s 5 2
Neisseria meningitidis CU385 s 5 2
Pseudomonas syringae pv. actinidiae TP1 s 5 2
Acinetobacter baumannii 24845_6 s 5 2
Acinetobacter baumannii 44895_1 s 5 2
Mycobacterium tuberculosis TKK_04_0112 s 5 2
Gordonia sp. KTR9 s 5 2
Nocardia brasiliensis ATCC 700358 p 5 2
Actinomadura madurae LIID-AJ290 s 5 2
Acinetobacter baumannii 26016_9 s 5 2
Staphylococcus capitis subsp. capitis s 5 2
Escherichia coli Nissle 1917 s 5 2
Frankia sp. CpI1-P s 5 2
Butyrivibrio sp. AE2032 s 5 2
Tissierellia bacterium S5-A11 s 5 2
Helicobacter magdeburgensis s 5 2
Escherichia coli s 5 2
Bacillus cereus s 5 2
Kocuria palustris s 5 2
Vibrio alginolyticus s 5 2
Acinetobacter baumannii s 5 2
Escherichia coli s 5 2
Escherichia coli s 5 2
[Haemophilus] parasuis p 5 2
Helicobacter pylori s 5 2
Klebsiella aerogenes s 5 2
Bacillus cereus s 5 2

*p=pathogen;s=symbiont