Metamenu

Genomes encoding eukaryotic-like proteins

PF13407 Periplasmic binding protein domain

Copy number in non-pathogens:
Mean=4.22 Stddev=6.57

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Rhizobium rhizogenes NBRC 13257 s 4 36
Mesorhizobium loti MAFF303099 s 4 36
Rhizobium leguminosarum bv. viciae 3841 s 4 34
Sinorhizobium meliloti Rm41 s 5 40
Mesorhizobium metallidurans STM 2683 s 6 47
Mesorhizobium plurifarium s 7 55
Mesorhizobium plurifarium s 7 51
Mesorhizobium plurifarium s 7 55
Mesorhizobium plurifarium s 9 66
Vibrio nigripulchritudo Wn13 s 4 36
Vibrio nigripulchritudo SOn1 s 4 36
Vibrio nigripulchritudo SO65 s 5 38
Vibrio nigripulchritudo AM115 s 5 38
Vibrio nigripulchritudo SFn27 s 4 36
Vibrio nigripulchritudo SFn135 s 4 36
Vibrio nigripulchritudo ENn2 s 4 36
Vibrio nigripulchritudo FTn2 s 5 38
Vibrio nigripulchritudo BLFn1 s 4 35
Rhizobium leguminosarum bv. trifolii WSM1325 s 4 35
[Clostridium] hylemonae DSM 15053 s 4 33
Dorea sp. D27 s 4 34
[Clostridium] bolteae WAL-14578 s 4 37
[Clostridium] clostridioforme WAL-7855 s 4 34
[Clostridium] bolteae ATCC BAA-613 s 4 37
Rhizobium sp. AP16 s 4 32
Burkholderia sp. BT03 s 4 33
Mesorhizobium opportunistum WSM2075 p 5 41
Rhizobium giardinii bv. giardinii H152 s 5 39
Sinorhizobium medicae WSM1115 s 4 37
Rhizobium leguminosarum bv. trifolii SRDI565 s 4 32
Rhizobium leguminosarum bv. viciae 248 s 4 33
Mesorhizobium loti NZP2037 s 6 49
Rhizobium leguminosarum bv. phaseoli 4292 s 5 39
Rhizobium leguminosarum bv. viciae WSM1481 s 4 31
Rhizobium leguminosarum bv. trifolii SRDI943 s 4 36
Rhizobium leguminosarum bv. viciae WSM1455 s 4 31
Rhizobium leguminosarum bv. trifolii WSM597 s 5 38
Mesorhizobium sp. L103C119B0 s 5 38
Mesorhizobium sp. LNHC221B00 s 4 37
Mesorhizobium sp. LNJC384A00 s 5 40
Mesorhizobium sp. LNJC386A00 s 5 38
Mesorhizobium sp. LNJC391B00 s 5 43
Mesorhizobium sp. LNJC395A00 s 5 38
Mesorhizobium sp. LNJC403B00 s 5 38
Sinorhizobium meliloti 4H41 s 4 37
Rhizobium mongolense USDA 1844 s 4 36
Ensifer sp. USDA 6670 s 4 36
Sinorhizobium meliloti WSM4191 s 5 38
Sinorhizobium meliloti CIAM1775 s 4 36
Mesorhizobium sp. WSM3224 s 5 43
Sinorhizobium meliloti GVPV12 s 6 46
Pleomorphomonas oryzae DSM 16300 s 4 37
Sinorhizobium meliloti BO21CC s 5 39
Sinorhizobium meliloti AK58 s 4 37
Mesorhizobium ciceri CMG6 s 7 53
Sinorhizobium meliloti Mlalz-1 s 5 38
Sinorhizobium medicae WSM244 s 5 39
Sinorhizobium meliloti MVII-I s 5 38
Rhizobium leguminosarum bv. viciae GB30 s 4 36
Rhizobium leguminosarum bv. viciae Vh3 s 4 37
Rhizobium leguminosarum bv. viciae Ps8 s 4 32
Rhizobium leguminosarum bv. trifolii TA1 s 4 37
Mesorhizobium erdmanii USDA 3471 s 5 39
Rhizobium leguminosarum bv. viciae Vc2 s 5 40
Mesorhizobium loti CJ3sym s 6 44
Inquilinus limosus DSM 16000 s 4 34
Rhizobium leucaenae USDA 9039 s 5 41
Ruminococcus gauvreauii DSM 19829 s 7 55
Rhizobium leguminosarum bv. viciae VF39 s 4 36
Rhizobium leguminosarum bv. viciae UPM1131 s 4 37
Rhizobium leguminosarum bv. viciae UPM1137 s 4 36
Sinorhizobium meliloti RRl128 s 4 37
Sinorhizobium medicae DI28 s 5 39
Rhizobium leguminosarum bv. phaseoli FA23 s 5 41
Rhizobium gallicum bv. gallicum R602sp s 5 41
Paraburkholderia graminis C4D1M s 4 32
Clostridiales bacterium 1_7_47FAA s 4 37
Clostridium sp. D5 s 5 40
[Clostridium] clostridioforme 2_1_49FAA s 4 35
Rhizobium sp. CCGE 510 s 4 34
Rhizobium etli CNPAF512 s 4 37
Rhizobium grahamii CCGE 502 s 4 35
Rhizobium sp. Kim5 s 4 34
Shinella sp. DD12 s 6 46
Rhizobium freirei PRF 81 s 4 36
Sinorhizobium meliloti CCNWSX0020 s 4 36
Clostridium diolis DSM 15410 s 4 33
Mesorhizobium amorphae CCNWGS0123 s 5 41
Sinorhizobium meliloti AK75 s 4 35
Sinorhizobium meliloti A0641M s 4 35
Sinorhizobium meliloti AK11 s 4 37
Sinorhizobium meliloti AE608H s 5 38
Sinorhizobium meliloti C0438LL s 4 36
Sinorhizobium meliloti H1 s 4 34
Sinorhizobium meliloti C0431A s 4 35
Sinorhizobium meliloti A0643DD s 4 34
Mesorhizobium ciceri WSM4083 s 6 44
Labrenzia sp. DG1229 s 5 38
[Clostridium] bolteae 90B7 s 4 37
[Clostridium] bolteae 90B8 s 4 36
[Clostridium] bolteae 90A9 s 4 36
[Clostridium] bolteae 90A5 s 4 36
[Clostridium] bolteae 90B3 s 4 36
[Clostridium] clostridioforme 90A6 s 4 34
[Clostridium] clostridioforme 90A4 s 4 34
[Clostridium] clostridioforme 90A7 s 4 36
[Clostridium] clostridioforme 90B1 s 4 34
[Clostridium] clostridioforme 90A1 s 4 34
[Clostridium] clostridioforme 90A3 s 4 34
[Clostridium] clostridioforme 90A8 s 4 35
[Clostridium] clostridioforme CM201 s 4 34
Rhizobium leguminosarum bv. trifolii CC278f s 5 39
Mesorhizobium loti R7A s 4 34
Sinorhizobium meliloti WSM1022 s 5 39
Mesorhizobium sp. WSM1293 s 5 38
Mesorhizobium sp. WSM2561 s 4 37
Mesorhizobium sp. WSM3626 s 4 33
Rhizobium leguminosarum bv. trifolii CC283b s 5 39
Mesorhizobium loti R88b s 6 45
Verminephrobacter eiseniae EF01-2 s 4 31
Agrobacterium radiobacter K84 s 4 37
Rhizobium etli CFN 42 s 4 33
Sinorhizobium meliloti GR4 s 5 39
Sinorhizobium fredii USDA 257 s 4 33
Agrobacterium rhizogenes s 4 33
Lactonifactor longoviformis DSM 17459 s 4 32
Rhizobium leguminosarum bv. trifolii WSM1689 s 4 32
Agrobacterium rhizogenes s 4 33
Agrobacterium rhizogenes s 6 50
Rhizobium tropici s 4 36
Agrobacterium rhizogenes s 4 31
Rhizobium tropici s 4 35
Rhizobium tropici s 4 34
Agrobacterium rhizogenes s 5 41
Rhizobium tropici s 6 44
Agrobacterium rhizogenes s 4 33
Blautia schinkii DSM 10518 s 8 57
Mesorhizobium huakuii 7653R p 5 43
Sinorhizobium meliloti s 5 39
Sinorhizobium meliloti s 5 40
Rhizobium phaseoli s 4 34
Rhizobium phaseoli s 4 36
Rhizobium phaseoli s 4 34
Rhizobium phaseoli s 4 34
Rhizobium phaseoli s 4 34
Rhizobium phaseoli s 4 36
Rhizobium phaseoli s 4 34
Rhizobium phaseoli s 4 32
Rhizobium phaseoli s 4 33
Rhizobium phaseoli s 4 37
Rhizobium phaseoli s 4 32
Rhizobium phaseoli s 4 36
Rhizobium phaseoli s 4 36
Rhizobium sp. N324 s 4 33
Rhizobium sp. N541 s 4 33
Rhizobium sp. N941 s 4 33
Rhizobium gallicum s 4 37
Sinorhizobium meliloti s 4 34
Sinorhizobium meliloti s 5 39
Mesorhizobium amorphae CCNWGS0123 s 5 41
Sinorhizobium sp. RAC02 s 5 40
Mesorhizobium sp. WSM1497 s 5 38
[Clostridium] clostridioforme s 4 33
[Clostridium] clostridioforme s 4 33
Mesorhizobium loti NZP2037 s 6 49
[Clostridium] clostridioforme s 4 35
Pantoea rwandensis s 4 33
Inquilinus limosus s 4 31
Burkholderia sp. BT03 s 4 33
Sinorhizobium meliloti s 4 36
Sinorhizobium meliloti s 5 38
Sinorhizobium meliloti s 5 39
Sinorhizobium meliloti s 5 39
Sinorhizobium meliloti s 5 38
Sinorhizobium meliloti s 4 34
Sinorhizobium meliloti s 5 40
Sinorhizobium meliloti s 5 39
Sinorhizobium meliloti s 4 36
Sinorhizobium meliloti s 5 38
Sinorhizobium meliloti s 4 37
Sinorhizobium meliloti 1021 s 5 38
Sinorhizobium medicae WSM419 s 4 37
Sinorhizobium fredii NGR234 s 4 37
Mesorhizobium ciceri biovar biserrulae WSM1271 s 5 38

*p=pathogen;s=symbiont